Copernicus
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Getting Started
Copernicus overlay network
Tutorials
Introductory Tutorial
MSM Tutorial
Free Energy Tutorial
String-of-swarms method
Module Tutorial
Developer Documentation
Copernicus
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Tutorials
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Contents:
Introductory Tutorial
Installation
Creating a workflow for molecular simulations
Listing workflow functions
Providing input files to our project.
Looking at the results
Running more simulations.
Pausing a project
Finishing a project
MSM Tutorial
Prerequisites
Learning the method
Overview of the workflow
Settings
How to determine what parameters to set?
Free Energy Tutorial
Prerequisites
Learning the method
Overview of the workflow
Settings
How to determine what parameters to set?
Example 1: Hydration Free Energy of Ethanol
Example 2: Binding Free Energy of Ethanol to Ethanol
String-of-swarms method
Introduction
Prerequisites
Method protocol
Demo running
Parameter reference
Module Tutorial
The components of a module
Defining the xml and the run method
Defining the worker plugin
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